HRE Finder: A Tool for Quarrying Hypoxia-Response Element in Genomic Sequences
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Title |
HRE Finder: A Tool for Quarrying Hypoxia-Response Element in Genomic Sequences
Not Available |
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Creator |
Iliyas, R.
N.S. Nagpure P. Srivastava A.K. Pathak R. Kumar V. S. Baisvar M. Singh B. Kushwaha |
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Subject |
Database
Hypoxia inducible factor Hypoxia response element Hypoxia Transcription Gene Enhancer Search algorithm |
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Description |
Not Available
During hypoxia, the hypoxia inducible factor (HIF) binds to hypoxia-response elements (HRE) and induces the expression of hypoxia-inducible genes (HIG). A functionally active HRE typically contains an adjacent hypoxia ancillary sequence (HAS) in its downstream within the space of 7-15 nt. Here, a computational tool 'HRE Finder' is discussed using an example data set. The tool provides the ability for mining canonical HREs and predicting functional HREs in the upstream region of genes, which can be an indispensable tool for genome-wide analysis and identification of hypoxia inducible genes in vertebrates. CABin, ICAR-IASRI, New Delhi. |
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Date |
2021-07-23T06:14:46Z
2021-07-23T06:14:46Z 2017-07-10 |
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Type |
Research Paper
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Identifier |
Iliyas Rashid, Naresh Sahebrao Nagpure, Prachi Srivastava, Ajey Kumar Pathak, Ravindra Kumar, Vishwamitra Singh Baisvar, Mahender Singh and Basdeo Kushwaha. 2017. HRE Finder: A Tool for Quarrying Hypoxia-Response Element in Genomic Sequences.Int.J.Curr.Microbiol.App.Sci. 6(7): 1580-1586. doi: https://doi.org/10.20546/ijcmas.2017.607.190
2319-7706 http://krishi.icar.gov.in/jspui/handle/123456789/49460 |
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Language |
English
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Relation |
Not Available;
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Publisher |
Excellent Publishers
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