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HRGFish: A database of hypoxia responsive genes in fishes

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Title HRGFish: A database of hypoxia responsive genes in fishes
Not Available
 
Creator Iliyas Rashid
Naresh Sahebrao Nagpure
Prachi Srivastava
Ravindra Kumar
Ajey Kumar Pathak
Mahender Singh
Basdeo Kushwaha
 
Subject Database
Hypoxia
Fish
Genes
Functional annotation
 
Description Not Available
Several studies have highlighted the changes in the gene expression due to the hypoxia response in
fishes, but the systematic organization of the information and the analytical platform for such genes
are lacking. In the present study, an attempt was made to develop a database of hypoxia responsive
genes in fishes (HRGFish), integrated with analytical tools, using LAMPP technology. Genes reported
in hypoxia response for fishes were compiled through literature survey and the database presently
covers 818 gene sequences and 35 gene types from 38 fishes. The upstream fragments (3,000 bp),
covered in this database, enables to compute CG dinucleotides frequencies, motif finding of the hypoxia
response element, identification of CpG island and mapping with the reference promoter of zebrafish.
The database also includes functional annotation of genes and provides tools for analyzing sequences
and designing primers for selected gene fragments. This may be the first database on the hypoxia
response genes in fishes that provides a workbench to the scientific community involved in studying the
evolution and ecological adaptation of the fish species in relation to hypoxia.
CABin Scheme of ICAR, implemented through ICAR-IASRI, New Delhi.
 
Date 2021-07-24T05:58:28Z
2021-07-24T05:58:28Z
2017-02-13
 
Type Research Paper
 
Identifier Rashid, I., Nagpure, N.S., Srivastava, P., Kumar, R., Pathak, A.K., Singh, M. and Kushwaha, B., 2017. HRGFish: A database of hypoxia responsive genes in fishes. Scientific reports, 7(1), pp.1-9.
2045-2322
http://krishi.icar.gov.in/jspui/handle/123456789/49697
 
Language English
 
Relation Not Available;
 
Publisher Nature Portfolio