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The draft genome of Labeo catla

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Title The draft genome of Labeo catla
Not Available
 
Creator L Sahoo
P Das
B Sahoo
G Sahoo
P K Meher
K.D Mahapatra
Sundaray
 
Subject Labeo catla, Hybrid assembly, Genomics resource, Indian major carp
 
Description Not Available
Labeo catla (catla), one of the three Indian major carps, is native to the Indo-Gangetic riverine system
of India as well as the rivers of Pakistan, Bangladesh, Nepal and Myanmar. Its higher growth rate and compatibility
with other major carps, specifc surface feeding habit, and consumer preference have increased its popularity in carp
polyculture systems among the fsh farmers in Indian subcontinent. Recent advancement in sequencing technology
coupled with massive parallel sequencing platforms has facilitated accelerated genetic improvement in aquaculture
species through integration of genomics tools. A draft genome and allied resources are lacking in catla. Therefore, in
the present study, we have performed de-novo assembly of Labeo catla for the frst time. A male farm reared catla was used for extracting high molecular weight genomic DNA followed
by sequencing in Oxford Nanopore and Illumina platforms. Approximately, 80× coverage of sequence data was
assembled adopting the hybrid assembly strategy. The assembled genome size of catla was 1.01 Gb containing 5345
scafolds with N50 value 0.7 Mb and more than 92% BUSCO completeness. Gene annotation resulted in 25,812 predicted genes.
Not Available
 
Date 2023-01-04T12:14:44Z
2023-01-04T12:14:44Z
2020-09-03
 
Type Journal
 
Identifier Sahoo, L., Das, P., Sahoo, B., Das, G., Meher, P. K., Udit, U. K., Mahapatra, K. D. and Sundaray (2020). The draft genome of Labeo catla. BMC Res Notes 13: 411. https://doi. org/10.1186/s13104-020-05240-w.
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http://krishi.icar.gov.in/jspui/handle/123456789/75384
 
Language English
 
Relation Not Available;
 
Publisher Not Available