Record Details

Enabling reusability of plant phenomic datasets with MIAPPE 1.1

CGSpace

View Archive Info
 
 
Field Value
 
Title Enabling reusability of plant phenomic datasets with MIAPPE 1.1
 
Creator Papoutsoglou, Evangelia A.
Faria, Daniel
Arend, Daniel
Arnaud, Elizabeth
Athanasiadis, Ioannis N.
Chaves, Inês
Coppens, Frederik
Cornut, Guillaume
Costa, Bruno V.
Ćwiek-Kupczyńska, Hanna
Droesbeke, Bert
Finkers, Richard
Gruden, Kristina
Junker, Astrid
King, Graham J.
Krajewski, Paweł
Lange, Matthias
Laporte, Marie-Angélique
Michotey, Célia
Oppermann, Markus
Ostler, Richard
Poorter, Hendrik
Rez-Gonzalez, Ricardo Ramı
Ramšak, Živa
Reif, Jochen C.
Rocca Serra, Philippe
Sansone, Susanna-Assunta
Scholz, Uwe
Tardieu, François
Uauy, Cristobal
Usadel, Björn
Visser, Richard G.F.
Weise, Stephan
Kersey, Paul J.
Miguel, Célia M.
Adam-Blondon, Anne-Françoise
Pommier, Cyril
 
Subject metadata
interoperability
information retrieval
phenotypes
data
standards
fenotipos
interoperabilidad
metadatos
normas
 
Description Enabling data reuse and knowledge discovery is increasingly critical in modern science, andrequires an effort towards standardising data publication practices. This is particularly chal-lenging in the plant phenotyping domain, due to its complexity and heterogeneity. We have produced the MIAPPE 1.1 release, which enhances the existing MIAPPE standardin coverage, to support perennial plants, in structure, through an explicit data model, and inclarity, through definitions and examples. We evaluated MIAPPE 1.1 by using it to express several heterogeneous phenotyping exper-iments in a range of different formats, to demonstrate its applicability and the interoperabilitybetween the various implementations. Furthermore, the extended coverage is demonstratedby the fact that one of the datasets could not have been described under MIAPPE 1.0. MIAPPE 1.1 marks a major step towards enabling plant phenotyping data reusability,thanks to its extended coverage, and especially the formalisation of its data model, whichfacilitates its implementation in different formats. Community feedback has been critical tothis development, and will be a key part of ensuring adoption of the standards.
 
Date 2020-07
2020-12-22T14:11:41Z
2020-12-22T14:11:41Z
 
Type Journal Article
 
Identifier Papoutsoglou, E.A.; Faria, D.; Arend, D.; Arnaud, E.; Athanasiadis, I.N.; Chaves, I.; Coppens, F.; Cornut, G.; Costa, B.V.; Ćwiek-Kupczyńska, H.; Droesbeke, B.; Finkers, R.; Gruden, K.; Junker, A.; King, G.J.; Krajewski, P.; Lange, M.; Laporte, M-A.; Michotey, C.; Oppermann, M.; Ostler, R.; Poorter, H.; Rez-Gonzalez, R.R.; Ramšak, Ž.; Reif, J.C.; Rocca-Serra, P.; Sansone, S-A.; Scholz, U.; Tardieu, F.; Uauy, C.; Usadel, B.; Visser, R.G.F.; Weise, S.; Kersey, P.J.; Miguel, C.M.; Adam-Blondon, A-F.; Pommier, C. (2020) Enabling reusability of plant phenomic datasets with MIAPPE 1.1. New Phytologist 227 p. 260–273. ISSN: 1469-8137
1469-8137
https://hdl.handle.net/10568/110587
https://doi.org/10.1111/nph.16544
 
Language en
 
Rights CC-BY-4.0
Open Access
 
Format p. 260-273
application/pdf
 
Publisher Wiley
 
Source New Phytologist