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Complete genome sequence of a novel secovirid infecting cassava in the Americas

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Title Complete genome sequence of a novel secovirid infecting cassava in the Americas
 
Creator Leiva, Ana Maria
Jiménez Polo, Jenyfer
Sandoval, Hector
Perez, Shirley
Cuéllar, Wilmer Jose
 
Subject Secoviridae
genomes
infectious diseases
disease transmission
genomas
enfermedades infecciosas
transmisión de enfermedades
 
Description We report the complete genome sequence of a field isolate of a novel bipartite secovirid infecting cassava in Colombia, provisionally named "cassava torrado-like virus" (CsTLV). The genome sequence was obtained using Oxford Nanopore Technology, and the 5’ ends were confirmed by RACE. The RNA1 is 7252 nucleotides (nt) long, encoding a polyprotein of 2336 amino acids (aa) containing the typical “replication block”, conserved torradovirus motifs, and a Maf/Ham1 domain, which is not commonly found in viral genomes. The RNA2 is 4469 nt long and contains two overlapping ORFs encoding proteins of 226 and 1179 aa, showing the characteristic genome arrangement of members of the genus Torradovirus.
 
Date 2022-01-03
2022-08-25T10:22:59Z
2022-08-25T10:22:59Z
 
Type Journal Article
 
Identifier Leiva, A.M.; Jimenez, J.; Sandoval, H.; Perez, S.; Cuellar, W.J. (2022) Complete genome sequence of a novel secovirid infecting cassava in the Americas. Archives of Virology 167 p. 665–668. ISSN: 0304-8608
0304-8608
https://hdl.handle.net/10568/120939
https://doi.org/10.1007/s00705-021-05325-2
 
Language en
 
Rights CC-BY-4.0
Open Access
 
Format p. 665–668
application/pdf
 
Publisher Springer
 
Source Archives of Virology