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Panache: a web browser-based viewer for linearized pangenomes

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Title Panache: a web browser-based viewer for linearized pangenomes
 
Creator Durant, Éloi
Sabot, François
Conte, Matthieu
Rouard, Mathieu
 
Subject monitoring systems
digital technology
innovation adoption
genomes
nucleotide sequence
tecnología digital
adopción de innovaciones
genomas
 
Description Pangenomics evolved since its first applications on bacteria, extending from the study of genes for a given population to the study of all of its sequences available. While multiple methods are being developed to construct pangenomes in eukaryotic species there is still a gap for efficient and user-friendly visualization tools. Emerging graph representations come with their own challenges, and linearity remains a suitable option for user-friendliness.We introduce Panache, a tool for the visualization and exploration of linear representations of gene-based and sequence-based pangenomes. It uses a layout similar to genome browsers to display presence absence variations and additional tracks along a linear axis with a pangenomics perspective.Panache is available at github.com/SouthGreenPlatform/panache under the MIT License.
 
Date 2021-12-07
2021-10-06T09:13:33Z
2021-10-06T09:13:33Z
 
Type Journal Article
 
Identifier Durant, É.; Sabot, F.; Conte, M.; Rouard, M. (2021) Panache: a web browser-based viewer for linearized pangenomes. Bioinformatics btab688 ISSN: 1367-4803
1367-4803
https://hdl.handle.net/10568/115324
https://github.com/SouthGreenPlatform/panache
https://doi.org/10.1093/bioinformatics/btab688
 
Language en
 
Rights CC-BY-4.0
Open Access
 
Format application/pdf
 
Publisher Oxford University Press (OUP)
 
Source Bioinformatics