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Metagenome analysis from the sediment of river Ganga and Yamuna: In search of beneficial microbiome

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Title Metagenome analysis from the sediment of river Ganga and Yamuna: In search of beneficial microbiome
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Creator Behera BK
Patra BKB
Chakraborty HJ
Sahu P
Rout AK
Sarkar DJ
Parida PK
Raman RK
Rao AR
Rai A
Das BK
 
Subject Metagenome, Ganga, Yamuna, Microbiome
 
Description Not Available
Beneficial microbes are all around us and it remains to be seen, whether all diseases and disorders can be prevented or treated with beneficial microbes. In this study, the presence of various beneficial bacteria were identified from the sediments of Indian major Rivers Ganga and Yamuna from nine different sites using a metagenomic approach. The metagenome sequence analysis using the Kaiju Web server revealed the presence of 69 beneficial bacteria. Phylogenetic analysis among these bacterial species revealed that they were highly diverse. Relative abundance analysis of these bacterial species is highly correlated with different pollution levels among the sampling sites. The PCA analysis revealed that Lactobacillus spp. group of beneficial bacteria are more associated with sediment sampling sites, KAN-2 and ND-3; whereas Bacillus spp. are more associated with sites, FAR-2 and ND-2. This is the first report revealing the richness of beneficial bacteria in the Indian rivers, Ganga and Yamuna. The study might be useful in isolating different important beneficial microorganisms from these river sediments, for possible industrial applications.
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Date 2021-08-30T14:00:04Z
2021-08-30T14:00:04Z
2020-10-01
 
Type Research Paper
 
Identifier Behera BK, Patra BKB, Chakraborty HJ, Sahu P, Rout AK, Sarkar DJ, Parida PK, Raman RK, Rao AR, Rai A and Das BK (2020). Metagenome analysis from the sediment of river Ganga and Yamuna: In search of beneficial microbiome. PLoS One, 15(10): p.e0239594.
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http://krishi.icar.gov.in/jspui/handle/123456789/61040
 
Language English
 
Relation Not Available;
 
Publisher PLoS One