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Bacterial diversity in rhizosphere of Paspalum scrobiculatum L. (kodo millet) is revealed with shotgun metagenome sequencing and data analysis

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Title Bacterial diversity in rhizosphere of Paspalum scrobiculatum L. (kodo millet) is revealed with shotgun metagenome sequencing and data analysis
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Creator Ratna Prabha
Dhananjaya P. Singh
Mukesh K. Verma
Pramod Sahu
Prafull Kumar
 
Subject Not Available
 
Description Not Available
Rhizosphere bacterial communities of kodo millet plant was analyzed from a large metagenome sequence dataset. Plant rhizosphere samples of kodo millet was collected in replicates and the metagenomic sequence data were obtained through shotgun sequencing. Overall sequences in the dataset were 476,649 comprising total read length of 179,349,372 base pairs. Taxonomic data analysis led to characterize α-diversity of 107 species. Dominance of actinobacteria followed by unclassified sequences (derived from Bacteria) was recorded. Raw data along with the analysis result is publicly available from the MG-RAST server with ID mgm4761530.3.
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Date 2023-11-22T15:15:24Z
2023-11-22T15:15:24Z
2018-01-01
 
Type Research Paper
 
Identifier Bacterial diversity in rhizosphere of Paspalum scrobiculatum L. (kodo millet) is revealed with shotgun metagenome sequencing and data analysis,Ratna Prabha,Dhananjaya P. Singh, Mukesh K. Verma,Pramod Sahu,Prafull Kumar
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http://krishi.icar.gov.in/jspui/handle/123456789/80917
 
Language English
 
Relation Not Available;
 
Publisher Elsevier