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Online web-repository of microsatellite repeats from fungal genomes

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Title Online web-repository of microsatellite repeats from fungal genomes
Not Available
 
Creator Suresh B. Mudunuri
Ratna Prabha
Dhananjaya P Singh
Gopala Krishna Murthy Nookala
 
Subject Database
Microsatellite
Fungus
Genome
Tandem
Repeat
Web Interface
 
Description Not Available
Microsatellites are tandem repetitions of short DNA motifs found in genomes of all organisms. They have been significantly used in DNA fingerprinting, genome mapping, DNA forensics, linkage analysis, genetic disease studies, are known to be involved in gene regulation, bacterial adaptation, genome evolution and are extensively used as genetic markers. Microsatellites have been used as primers for genotyping of fungal strains, to study the evolution of fungal genomes as well as in the epidemiological studies of fungal pathogens. However, the distribution, frequency and abundance of microsatellites in several fungal genomes is not well studied. So, we have constructed an exclusive database of fungal microsatellites and a user-friendly web-interface to analyse the distribution and abundance of these repeats. FungREP currently hosts microsatellite data of 910 sequences of 44 different fungi that includes complete genome sequences, whole genome shotgun sequences and contigs. More than 10 million perfect and imperfect microsatellites and their corresponding information such as the repeat unit, position information, repeat statistics, protein information, etc., can be accessed from the first version of FungREP1.0. The database can be accessed for free from www.mcr.org.in/fungrep
Not Available
 
Date 2023-11-22T15:32:22Z
2023-11-22T15:32:22Z
2017-01-01
 
Type Research Paper
 
Identifier Not Available
Not Available
http://krishi.icar.gov.in/jspui/handle/123456789/80921
 
Language English
 
Relation Not Available;
 
Publisher Not Available