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Example outputs from the meta-analysis fine-mapping simulation pipeline

Harvard Dataverse (Africa Rice Center, Bioversity International, CCAFS, CIAT, IFPRI, IRRI and WorldFish)

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Title Example outputs from the meta-analysis fine-mapping simulation pipeline
 
Identifier https://doi.org/10.7910/DVN/M86OCQ
 
Creator Kanai, Masahiro
 
Publisher Harvard Dataverse
 
Description This dataset contains example outputs from the meta-analysis fine-mapping simulation pipeline (https://github.com/mkanai/meta-finemapping-simulation) used in Kanai, M. et al. (2022). Due to a storage limit, only example outputs have been deposited.

Each directory contains the following simulated files.
hapgen2_genotypes: This directory contains simulated genotypes from HAPGEN2, restricted to each genotyping array as described in the manuscript.
assoc: This directory contains simulated GWAS results from PLINK2. Due to a storage limit, only one simulated phenotype is included.
meta_analysis and meta_analysis_grch38: This directory contains meta-analysis results across all the meta-analysis configurations (Table S4, ST4_simulation_configurations.tsv). Due to a storage limit, only one simulated phenotype is included. Directories are separated by whether variants are on GRCh37 or GRCh38.
 
Subject Medicine, Health and Life Sciences
 
Contributor Kanai, Masahiro