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Genome-enabled analysis of population dynamics and virulence associated loci in the oat crown rust fungus Puccinia coronata f. sp. avenae

CSIRO RDS Repository

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Title Genome-enabled analysis of population dynamics and virulence associated loci in the oat crown rust fungus Puccinia coronata f. sp. avenae
 
Creator Melania Figueroa
 
Subject Crop and pasture protection (incl. pests, diseases and weeds)
Agricultural biotechnology diagnostics (incl. biosensors)
 
Description These are VCF files that represent genomic variation of 182 to 217 Puccinia coronata f. sp. avenae isolates from the US against three genome references. Raw Illumina sequencing reads of 162 US and South African isolates used in this study are available in the NCBI BioProject PRJNA660269. Reads of 62 US isolates used in this study generated by Miller et al., (2020 - https://doi.org/10.25919/k0ze-ya06) are available in the NCBI BioProject PRJNA398546.
 
Publisher CSIRO
 
Contributor Tim Hewitt
Eva Henningsen
Danilo Pereira
Kerensa McElroy
Nazareno Eric
Sheshanka Dugyala
Hoa Nguyen-Phuc
Feng Li
Marisa Miller
Botma Visser
Zak Pretorius
Willem Boshoff
Jana Sperschneider
Eva Stukenbrock
Kianian Shahryar
Peter Dodds
 
Date 2023-08-24
 
Type —
 
Format —
 
Identifier csiro:60078
 
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