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Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures

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Title Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures
 
Identifier https://doi.org/10.7910/DVN/Z14LWA
 
Creator Mierau, Susanna
Sit, Timothy
Feord, Rachael
Oluigbo, David
 
Publisher Harvard Dataverse
 
Description This collection includes MATLAB-based code, microelectrode array (MEA) data, and other resources to assist users with our computational tool, the MEA network analysis pipeline (MEA-NAP).

** Dataverse contents: **

1. MEA-NAP.zip - The MATLAB-based code for MEA-NAP version 1.6.0. For the most up-to-date version, please see https://github.com/SAND-Lab/MEA-NAP/
** 2. MEA-NAP GUI Tutorial.mp4 - A detailed video guide to using MEA-NAP for new users.
** 3. NGN2_20230208_Data - MEA recordings from NGN2 neuronal cultures and batch analysis file. These are example inputs to MEA-NAP.
** 4. NGN2_20230208_OutputData - The full output folder including Steps 1-5 is zipped to preserve the folder organization. Outputs from Steps 1 and 2 are available for download as individual files.
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Subject Medicine, Health and Life Sciences
neuroscience, network neuroscience, functional connectivity, network topology, network dynamics, neuronal cultures, human cerebral organoids, NGN2 iPSC-derived cortical cultures
 
Language English
 
Date 2024-03-02
 
Contributor Mierau, Susanna
Synaptic and Network Development (SAND) Group
 
Type Microelectrode array (MEA) data in MATLAB (.mat) format
MEA-NAP Output folder with figures (.png and .svg) and tabular data (.csv)
MEA-NAP MATLAB scripts including documentation
Video tutorial (.mp4) to assist new users with MEA-NAP