Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures
Harvard Dataverse (Africa Rice Center, Bioversity International, CCAFS, CIAT, IFPRI, IRRI and WorldFish)
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Title |
Replication Data for: MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures
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Identifier |
https://doi.org/10.7910/DVN/Z14LWA
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Creator |
Mierau, Susanna
Sit, Timothy Feord, Rachael Oluigbo, David |
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Publisher |
Harvard Dataverse
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Description |
This collection includes MATLAB-based code, microelectrode array (MEA) data, and other resources to assist users with our computational tool, the MEA network analysis pipeline (MEA-NAP). ** Dataverse contents: ** 1. MEA-NAP.zip - The MATLAB-based code for MEA-NAP version 1.6.0. For the most up-to-date version, please see https://github.com/SAND-Lab/MEA-NAP/ ** 2. MEA-NAP GUI Tutorial.mp4 - A detailed video guide to using MEA-NAP for new users. ** 3. NGN2_20230208_Data - MEA recordings from NGN2 neuronal cultures and batch analysis file. These are example inputs to MEA-NAP. ** 4. NGN2_20230208_OutputData - The full output folder including Steps 1-5 is zipped to preserve the folder organization. Outputs from Steps 1 and 2 are available for download as individual files. ** When viewing "Files" below, we recommend you "Change View" to "Tree". |
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Subject |
Medicine, Health and Life Sciences
neuroscience, network neuroscience, functional connectivity, network topology, network dynamics, neuronal cultures, human cerebral organoids, NGN2 iPSC-derived cortical cultures |
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Language |
English
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Date |
2024-03-02
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Contributor |
Mierau, Susanna
Synaptic and Network Development (SAND) Group |
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Type |
Microelectrode array (MEA) data in MATLAB (.mat) format
MEA-NAP Output folder with figures (.png and .svg) and tabular data (.csv) MEA-NAP MATLAB scripts including documentation Video tutorial (.mp4) to assist new users with MEA-NAP |
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