ICAR Research Data Repository for Knowledge Management
Analysis code
Harvard Dataverse (Africa Rice Center, Bioversity International, CCAFS, CIAT, IFPRI, IRRI and WorldFish)
View Archive Info| Field | Value | |
| Title |
Analysis code
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| Identifier |
https://doi.org/10.7910/DVN/CHOTF0
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| Creator |
Draper, William
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| Publisher |
Harvard Dataverse
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| Description |
Python and C++ code for analysis of image data, including: A contour finding algorithm written in C++ and made accessible in Python using Ctypes. Compile the C++ code by running the "compile_contours" shell script, and access the library in python using "find_contours.py". A curvature measuring algorithm, for measuring the curvature of the raw contour data, "curvature_algorithm.py". A peak fitting algorithm for measuring the intensity of fluorescent receptor clusters, "fit_peak.py". The Python code depends on both Numpy and Scipy. Compilation of the contour algorithm requires g++. |
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| Subject |
Medicine, Health and Life Sciences
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| Contributor |
Draper, William
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