ICAR Research Data Repository for Knowledge Management
CISprimerTOOL: software to implement a comparative genomics strategy for the development of conserved intron scanning (CIS) markers
OAR@ICRISAT
View Archive Info| Field | Value | |
| Relation |
http://oar.icrisat.org/2140/
http://dx.doi.org/10.1111/j.1471-8286.2007.02035.x |
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| Title |
CISprimerTOOL: software to implement a comparative genomics strategy for the development of conserved intron scanning (CIS) markers |
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| Creator |
Jayashree, B
Jagadeesh, V T Hoisington, D A |
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| Subject |
Information Science
Genetics and Genomics |
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| Description |
The availability of complete, annotated genomic sequence information in model organisms is a rich resource that can be extended to understudied orphan crops through comparative genomic approaches. We report here a software tool (CISprimerTOOL) for the identification of conserved intron scanning regions using expressed sequence tag alignments to a completely sequenced model crop genome. The method used is based on earlier studies reporting the assessment of conserved intron scanning primers (called CISP) within relatively conserved exons located near exon-intron boundaries from onion, banana, sorghum and pearl millet alignments with rice. The tool is freely available to academic users at www.icrisat.org/gt-bt/ CISPTool.htm. |
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| Publisher |
Willey
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| Date |
2008
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| Type |
Article
PeerReviewed |
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| Format |
application/pdf
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| Language |
en
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| Rights |
—
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| Identifier |
http://oar.icrisat.org/2140/1/MolEcolRes8_3_575-577_2008.pdf
Jayashree, B and Jagadeesh, V T and Hoisington, D A (2008) CISprimerTOOL: software to implement a comparative genomics strategy for the development of conserved intron scanning (CIS) markers. Molecular Ecology Resources, 8 (3). pp. 575-577. ISSN 1755-0998 |
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