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Trends in the codon usage patterns of Chromohalobacter salexigens genes

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Title Trends in the codon usage patterns of Chromohalobacter salexigens genes
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Creator R. Sanjukta
M.S. Farooqi
N. Sharma
Anil Rai
Dwijesh C. Mishra
D.P. Singh
 
Subject Codon usage pattern
Correspondence analysis
Halophilic bacteria
Mutational bias
Relative synonymous codon usage
 
Description Not Available
Chromohalobacter salexigens, a Gammaproteobacterium belonging to the family Halomonadaceae, shows a broad salinity range for growth. In order to reveal the factors influencing architecture of protein coding genes in C. salexigens, pattern of synonymous codon usage bias has been investigated. Overall codon usage analysis of the microorganism revealed that C and G ending codons are predominantly used in all the genes which are indicative of mutational bias. Multivariate statistical analysis showed that the genes are separated along the first major explanatory axis according to their expression levels and their genomic GC content at the synonymous third positions of the codons.
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Date 2018-02-22T01:42:57Z
2018-02-22T01:42:57Z
2012
 
Type Research Paper
 
Identifier Not Available
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http://krishi.icar.gov.in/jspui/handle/123456789/5841
 
Language English
 
Relation Not Available;
 
Publisher Not Available