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Genome-wide In Silico Identification of Transcriptional Regulators Controlling the Response to Salt Stress in Soybean (Glycine max (L.) Merr.)

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Title Genome-wide In Silico Identification of Transcriptional Regulators Controlling the Response to Salt Stress in Soybean (Glycine max (L.) Merr.)
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Creator Vijayata Singh, Satish Kumar Sanwal, Zeetendra Singh, Giriraj Kumawat, Shivakumar M, Gyanesh Kumar Satpute, Sanjay Gupta, Balwinder Singh Gill, Nisha Walia, Mohan Lal Jakhar, Parbodh Chander Sharma and Jogendra Singh
 
Subject Soybean, In silico identification, Salt stress, Cis-regulatory elements
 
Description Not Available
Comprehensive characterization of networks of gene expression regulators is key challenge of functional
genomics. Soybean genomic sequences can be used to frame model for binding sites of fundamental transcription
factors, and RNA seq data. It has been manifested that the reverse genetics approach can reveal gene regulator
networks in soybean, which explains regulatory mechanisms for salt response from expression of gene patterns.
In this study, the sequences of protein is functionally validated salt tractable genes is used to key out soybean
orthologous with the help of ‘blastP’ search against Glycine max genome database. Thirty- eight salt responsive
genes allocate among 39 cis-acting elements of soybean is elucidated by the ‘PlantCARE’ database. Gene promoter
analysis of salt tractable genes indicated the presence of biotic and abiotic stress responsive, light, hormone,
plant tissues specific and gene specific cis-regulatory elements in soybean. A total, 38 salt tractable genes in
soybean is entrusted for GO terms based on the ‘Ensembl Plants’ database. These GO terms are sum up into the
three main categories (biological process, cellular component, and molecular function) and 62 sub-categories.
These GO annotations comprise a general profile signature of gene expression for salt tractable genes in soybean.
Our results explained about the identified soybean salt tractable genes differentially respond in plant growth,
development and gene regulation during biotic and abiotic stress conditions. The data obtained from this study
contribute to a better enlightening of the role of the regulatory and functional pathway of salt tolerant genes in
soybean.
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Date 2021-07-24T07:15:23Z
2021-07-24T07:15:23Z
2020-10-02
 
Type Research Paper
 
Identifier Singh V, Sanwal SK, Singh Z, Kumawat G, Shiva Kumar M, Satpute GK, Gupta S, Gill BS, Walia N, Jakhar ML, Sharma PC and Singh J*. 2020. Genome-wide In Silico Identification of Transcriptional Regulators Controlling the Response to Salt Stress in Soybean (Glycine max (L.) Merr.). Journal of Soil Salinity and Water Quality. 12(2): 277-289.
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http://krishi.icar.gov.in/jspui/handle/123456789/49748
 
Language English
 
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Publisher Not Available