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Novel Isoform Sequencing based full-length transcriptome resource for Indian White Shrimp, Penaeus indicus

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Title Novel Isoform Sequencing based full-length transcriptome resource for Indian White Shrimp, Penaeus indicus
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Creator K. Vinaya Kumar
MS. Shekhar
J. Ashok Kumar
PK. Sudheesh
K. Karthic
K. Nimisha
CP.Balasubramanian
Dushyant Singh Baghel
KK.Vijayan
Joykrushna Jena
T. Mohapatra
 
Subject Isoform Sequencing, PacBio, Iso-Seq, Indian White Shrimp, Penaeus indicus, transcriptome, lncRNA
 
Description Not Available
This is the first report of a comprehensive transcriptome generated from different tissues and larval stage of P. indicus with 238.98 Gb of sequence data from gills, hepatopancreas, muscle, and pooled post larvae. The only related complete genome available for shrimp is that of P. vannamei (Zhang et al., 2019b). In the absence of a genome for P. indicus, the full-length trasncriptome generated in this study would be a valuable resource for conducting functional studies involving desired economic traits.
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Date 2021-02-03T09:29:38Z
2021-02-03T09:29:38Z
2020-12-02
 
Type Research Paper
 
Identifier Katneni VK, Shekhar MS, Jangam AK, Prabhudas SK, Krishnan K, Kaikkolante N, Paran BC, Baghel DS, Koyadan VK, Jena J and Mohapatra T (2020) Novel Isoform Sequencing Based Full-Length Transcriptome Resource for Indian White Shrimp, Penaeus indicus. Front. Mar. Sci. 7:605098. doi: 10.3389/fmars.2020.605098
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http://krishi.icar.gov.in/jspui/handle/123456789/45224
 
Language English
 
Relation Not Available;
 
Publisher Frontiers